PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g01100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 278aa    MW: 31252.6 Da    PI: 8.3826
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g01100genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00086215237223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +Cp C+ +Fs+   L  H ++ H
  CA05g01100 215 PCPQCHLRFSTVKALIDHVQKvH 237
                 5*****************99988 PP

2zf-C2H215.45.2e-05249271223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +Cp C+k F+++  L+ H  + H
  CA05g01100 249 VCPRCSKGFRDPVALVEHVEKeH 271
                 7*****************99888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183108.37E-11459No hitNo description
Gene3DG3DSA:4.10.1110.102.9E-91053IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.371055IPR000058Zinc finger, AN1-type
SMARTSM001540.00481352IPR000058Zinc finger, AN1-type
PfamPF014282.6E-121351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.0E-1190148IPR000058Zinc finger, AN1-type
SuperFamilySSF1183102.55E-993147No hitNo description
PROSITE profilePS510397.98898145IPR000058Zinc finger, AN1-type
SMARTSM001540.0069101142IPR000058Zinc finger, AN1-type
PfamPF014287.6E-9101141IPR000058Zinc finger, AN1-type
SMARTSM003550.035214237IPR015880Zinc finger, C2H2-like
PfamPF138946.1E-4215237No hitNo description
PROSITE patternPS000280216237IPR007087Zinc finger, C2H2
SMARTSM003556.9248271IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.016248276IPR007087Zinc finger, C2H2
PROSITE patternPS000280250271IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGTPEFANLG KHCSVEDCRQ IDFLPFTCDC CHKVYCLDHR SYIRHQCPTA NKNNVTVVIC  60
PLCAKGVRLN PNEDPNITWE SHVNMECDPS NYEKATKKKK CPVPRCKELL TFSNTIKCRD  120
CTLDHCLKHR FGPDHNCPGP KKPEPSFQFM NFLNGSKDEP KKAQPTSSSR WTTSLLKVVS  180
SVKEKFNSEF NQTQQTGQSS HATNHAVTNT SQVEPCPQCH LRFSTVKALI DHVQKVHEKN  240
GVMNLTVDVC PRCSKGFRDP VALVEHVEKE HKGTSKG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571941.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13-like
SwissprotQ8VZ421e-119SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLM1CLM50.0M1CLM5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000700440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53112237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-120C2H2 family protein